Shopify vs Clerk
Dominant SaaS commerce platform — Online Store + Hydrogen headless
vs. User management and authentication as a service
Pricing tiers
Shopify
Starter
$5/mo. Sell via social/chat links. No checkout site. Basic.
$5/mo
Basic
$29/mo ($19 annual). Full store. 2.9% + 30¢ online. 2 staff.
$29/mo
Shopify
$79/mo ($49 annual). 2.7% online. 5 staff.
$79/mo
Advanced
$299/mo ($229 annual). 2.5% online. Custom reports. 15 staff.
$299/mo
Plus
$2,300/mo (starting). Enterprise features, checkout customization, unlimited staff.
$2300/mo
Enterprise
Custom. For $1M+ GMV merchants. Dedicated support, Checkout Extensibility.
Custom
Clerk
Free
50k MAU included. No SSO/SAML. Perfect for side projects and early prototypes.
Free
Pro
$25/mo (or $20/mo annual). 50k MAU, $0.02 each after. 1 enterprise SSO connection per app. Webhooks, JWT templates, custom session duration.
$25/mo
Business
$300/mo (or $250/mo annual). Advanced organizations, enhanced support, additional enterprise features.
$300/mo
Enterprise
Custom. Volume MAU discounts, SLA, workspace-wide SAML SSO, dedicated support.
Custom
Free-tier quotas head-to-head
Comparing starter on Shopify vs hobby on Clerk.
| Metric | Shopify | Clerk |
|---|---|---|
| mao | — | 100 orgs/month |
| mau | — | 50000 users/month |
| sso connections | — | 0 connections |
Features
Shopify · 22 features
- Admin APIs — REST + GraphQL for management.
- App Store — 8,000+ apps.
- B2B (Plus) — Company accounts + catalogs.
- Checkout — Shopify-managed checkout (PCI-compliant).
- Checkout Extensibility — UI extensions in checkout (Plus).
- Collections — Manual + smart grouping.
- Customers — CRM-lite + B2B (Plus).
- Discounts — Automatic + code-based.
- Hydrogen — React/Remix headless framework.
- Inventory — Multi-location stock.
- Markets — Multi-region selling (currency, language).
- Online Store — Default Liquid-based storefront.
- Orders + Fulfillment — Multi-location fulfillment.
- Oxygen — Edge hosting for Hydrogen (Plus).
- Products + Variants — Full PIM.
- Shipping + Rates — Carrier integrations.
- Shopify Functions — Rust/WASM backend extensions.
- Shopify Payments — First-party payment processor.
- Shop Pay — Accelerated checkout with saved payment.
- Storefront API — GraphQL for custom storefronts.
- Theme Store — First-party + paid themes.
- Webhooks — Event subscriptions.
Clerk · 15 features
- Account Portal — Hosted sign-in/user profile pages at accounts.yourapp.com — zero UI code, fully …
- Bot Protection — Cloudflare Turnstile CAPTCHA integrated into sign-up.
- Clerk Billing — Built-in Stripe-powered billing: subscriptions, plans, proration — ties directly…
- Enterprise SSO (SAML/OIDC) — SAML and OIDC for enterprise customers. Per-domain connection. Pro+ (1 included)…
- Impersonation — Act as a user from dashboard to debug. Logged.
- JWT Templates — Custom JWT issuance for third-party backends (Supabase, Hasura, Firebase, Convex…
- Machine Tokens (M2M) — API keys and machine tokens for service-to-service auth in addition to user sess…
- Multi-Factor Auth — TOTP (authenticator apps), SMS OTP, backup codes. Forced or optional per user.
- Organizations (B2B) — Multi-tenant orgs with roles, permissions, invitations, domain allowlist, and pe…
- Passkeys (WebAuthn) — Passwordless passkey sign-in with per-device biometrics.
- Prebuilt Components — Drop-in React components: <SignIn/>, <SignUp/>, <UserButton/>, <OrganizationSwit…
- Sessions — Server-side session tokens. Sliding expiration by default; configurable absolute…
- User Management — Full user CRUD, metadata (public/private/unsafe), email/phone verification, ban/…
- Waitlist Mode — Collect sign-ups before opening the app. Approve waitlist entries to activate ac…
- Webhooks — Events: user.created/updated/deleted, session.created, organization.* — delivere…
Developer interfaces
| Kind | Shopify | Clerk |
|---|---|---|
| CLI | shopify CLI | — |
| SDK | @shopify/admin-api-client, @shopify/hydrogen | @clerk/astro, @clerk/backend / @clerk/clerk-sdk-node, @clerk/chrome-extension, @clerk/clerk-expo, @clerk/clerk-js (vanilla), @clerk/clerk-react, @clerk/clerk-react-native, @clerk/nextjs, @clerk/nuxt, @clerk/remix, clerk-sdk-go, clerk-sdk-python, clerk-sdk-ruby, @clerk/tanstack-start, @clerk/vue |
| REST | Admin REST API | Backend REST API, Frontend API |
| GRAPHQL | Admin GraphQL API, Storefront API | — |
| MCP | Shopify MCP (unofficial) | Clerk MCP |
| OTHER | Liquid Templates, Shopify Admin, Shopify Webhooks | Webhooks (Svix) |
Staxly is an independent catalog of developer platforms. Outbound links to Shopify and Clerk are plain references to their official websites. Pricing is verified against vendor pages at publication time — reconfirm before buying.
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